Integrated theoretical study of the inhibitory activity of (E)-3-(2-benzylidenehydrazinyl)-5,6-diphenyl-1,2,4-triazine derivatives on α-Glucosidase
Author Affiliations
- 1Laboratory of Physical Chemistry-Materials and Molecular Modelling (LPC3M), Unit of Theoretical Chemistry and Molecular Modelling (UTC2M), University of Abomey-Calavi (UAC)/Benin
- 2Laboratory of Physical Chemistry-Materials and Molecular Modelling (LPC3M), Unit of Theoretical Chemistry and Molecular Modelling (UTC2M), University of Abomey-Calavi (UAC)/Benin
- 3Laboratory of Physical Chemistry-Materials and Molecular Modelling (LPC3M), Unit of Theoretical Chemistry and Molecular Modelling (UTC2M), University of Abomey-Calavi (UAC)/Benin
- 4Laboratory of Physical Chemistry-Materials and Molecular Modelling (LPC3M), Unit of Theoretical Chemistry and Molecular Modelling (UTC2M), University of Abomey-Calavi (UAC)/Benin
Res.J.chem.sci., Volume 16, Issue (1), Pages 39-51, February,18 (2026)
Abstract
Diabetes has become a major global public health issue, with a significant rise in its prevalence, ranking among the top 10 causes of death worldwide. Various therapeutic and preventive approaches have been proposed. However, there are currently few drugs capable of counteracting the development of associated pathologies. This integrated study examines the relationship between the electronic structure and the inhibitory activity of a series of (E)-3-(2-benzylidenehydrazinyl)-5,6-diphenyl-1,2,4-triazine compounds on α-Glucosidase enzyme to propose new, more effective molecular structures. Based on the analysis of the resulting quantitative structure-activity relationship (QSAR) equation, a 2D pharmacophore was proposed. Subsequently, a new molecular structure was designed using Craig plot according to this pharmacophore. Through virtual screening of this compound, one hundred new hit molecules structures were identified and subjected to molecular docking analysis. Considering the PLP scores obtained and ADMET analysis, only six of them satisfy Lipinski’s rule, among which the molecule M30 emerged as the best candidate for the treatment of type 2 diabetes.
References
- Ismail, S.; Chandel, T. I.; Ramakrishnan, J.; Khan, R. H.; Poomani, K.; Devarajan, N. (2023)., Phytochemical Profiling, Human Insulin Stability and Alpha Glucosidase Inhibition of Gymnema Latifolium Leaves Aqueous Extract: Exploring through Experimental and in Silico Approach., Comput. Biol. Chem., 107, 107964. https://doi.org/10.1016/j.compbiolchem.2023.107964.
- Thabet, H. K.; Abusaif, M. S.; Imran, M.; Helal, M. H.; Alaqel, S. I.; Alshehri, A.; Mohd, A. A.; Ammar, Y. A.; Ragab, A. (2024)., Discovery of Novel 6-(Piperidin-1-Ylsulfonyl)-2H-Chromenes Targeting α-Glucosidase, α-Amylase, and PPAR-γ: Design, Synthesis, Virtual Screening, and Anti-Diabetic Activity for Type 2 Diabetes Mellitus., Comput. Biol. Chem., 111, 108097. https://doi.org/10.1016/j.compbiolchem.2024.108097.
- Abbasi, I.; Nadeem, H.; Saeed, A.; Kharl, H. A. A.; Tahir, M. N.; Naseer, M. M. (2021)., Isatin-Hydrazide Conjugates as Potent α-Amylase and α-Glucosidase Inhibitors: Synthesis, Structure and in Vitro Evaluations., Bioorganic Chem., 116, 105385. https://doi.org/10.1016/j.bioorg.2021. 105385.
- Ganwir, P.; Bhadane, R.; Chaturbhuj, G. U. (2024)., In-Silico Screening and Identification of Glycomimetic as Potential Human Sodium-Glucose Co-Transporter 2 Inhibitor., Comput. Biol. Chem., 110, 108074. https://doi.org/10.1016/j.compbiolchem.2024.108074.
- Rigalleau, V.; Monlun, M.; Foussard, N.; Blanco, L. and Mohammedi, K. (2020)., Diagnostic Du Diabète., EMC - AKOS Traité Médecine, 24(1), 1–7.
- Gupta, M. K. and Vadde, R. (2019)., Identification and Characterization of Differentially Expressed Genes in Type 2 Diabetes Using in Silico Approach., Comput. Biol. Chem., 79, 24–35. https://doi.org/10.1016/j.compbiolchem. 2019.01.010.
- Shamim, S.; Khan, K. M.; Ullah, N.; Chigurupati, S.; Wadood, A.; Ur Rehman, A.; Ali, M.; Salar, U.; Alhowail, A.; Taha, M. and Perveen, S. (2020)., Synthesis and Screening of (E)-3-(2-Benzylidenehydrazinyl)-5,6-Diphenyl-1,2,4-Triazine Analogs as Novel Dual Inhibitors of α-Amylase and α-Glucosidase., Bioorganic Chem., 101, 103979. https://doi.org/10.1016/j.bioorg.2020.103979.
- Cho, N. H.; Karuranga, S.; Huang, Y.; Da Rocha Fernandes, J. D.; Ohlrogge, A. W. and Malanda, B. (2018)., IDF Diabetes Atlas: Global Estimates of Diabetes Prevalence for 2017 and Projections for 2045., Diabetes Res. Clin. Pract., 138, 271–281. https://doi.org/10.1016/j.diabres.2018.02.023.
- He, Q.; Han, C.; Li, G.; Guo, H.; Wang, Y.; Hu, Y.; Lin, Z. and Wang, Y. (2020)., In Silico Design Novel (5-Imidazol-2-Yl-4-Phenylpyrimidin-2-Yl)[2-(2-Pyridylamino)Ethyl] Amine Derivatives as Inhibitors for Glycogen Synthase Kinase 3 Based on 3D-QSAR, Molecular Docking and Molecular Dynamics Simulation., Comput. Biol. Chem., 88, 107328. https://doi.org/10.1016/j.compbiolchem.2020. 107328.
- Menteşe, E.; Baltaş, N. and Emirik, M. (2020)., Synthesis, α-Glucosidase Inhibition and in Silico Studies of Some 4-(5-Fluoro-2-Substituted-1H-Benzimidazol-6-Yl) Morpholine Derivatives., Bioorganic Chem., 101, 104002. https://doi.org/10.1016/j.bioorg.2020.104002.
- Kan, L.; Capuano, E.; Fogliano, V.; Verkerk, R.; Mes, J. J.; Tomassen, M. M. M. and Oliviero, T. (2021)., Inhibition of α-Glucosidases by Tea Polyphenols in Rat Intestinal Extract and Caco-2 Cells Grown on Transwell., Food Chem., 361, 130047. https://doi.org/10.1016/j.foodchem. 2021.130047.
- Prince Makarios Paul, S.; Parimala Devi, D.; Nancy Sukumar, A.; Praveena, G.; Jeba Beula, R. and Abiram, A. (2024)., Theoretical Insights on the Interaction between P-Synephrine and Metformin: A DFT, QTAIM and Drug-Likeness Investigation., Comput. Theor. Chem., 1233, 114473. https://doi.org/10.1016/j.comptc.2024.114473.
- Hu, C. and Jia, W. (2019)., Therapeutic Medications against Diabetes: What We Have and What We Expect., Adv. Drug Deliv. Rev., 139, 3–15. https://doi.org/10.1016/ j.addr.2018.11.008.
- Salehi; Ata; V. Anil Kumar; Sharopov; Ramírez-Alarcón; Ruiz-Ortega; Abdulmajid Ayatollahi; Tsouh Fokou; Kobarfard; Amiruddin Zakaria; Iriti; Taheri; Martorell; Sureda; Setzer; Durazzo; Lucarini; Santini; Capasso; Ostrander; Atta-ur-Rahman; Choudhary; Cho; Sharifi-Rad. (2019)., Antidiabetic Potential of Medicinal Plants and Their Active Components., Biomolecules, 9(10), 551. https://doi.org/10.3390/biom9100551.
- Katsila, T.; Spyroulias, G. A.; Patrinos, G. P. and Matsoukas, M. T. (2016)., Computational Approaches in Target Identification and Drug Discovery., Comput. Struct. Biotechnol. J., 14, 177–184. https://doi.org/10.1016/j.csbj. 2016.04.004.
- Nguyen Vo, T. H.; Tran, N.; Nguyen, D. and Le, L. (2016)., An in Silico Study on Antidiabetic Activity of Bioactive Compounds in Euphorbia Thymifolia Linn., SpringerPlus, 5(1), 1359. https://doi.org/10.1186/s40064-016-2631-5.
- Rao, M. M. V. and Hariprasad, T. P. N. (2021)., In Silico Analysis of a Potential Antidiabetic Phytochemical Erythrin against Therapeutic Targets of Diabetes., Silico Pharmacol., 9(1), 5. https://doi.org/10.1007/s40203-020-00065-8.
- Das, K.; Iyer, K. R.; Orfali, R.; Asdaq, S. M. B.; Alotaibi, N. S.; Alotaibi, F. S.; Alshehri, S.; Quadri, M. S. A.; Almarek, A.; Makhashin, N. B.; Alrashed, A. A.; Mohzari, Y. A.; Ghoneim, M. (2023)., In Silico Studies and Evaluation of in Vitro Antidiabetic Activity of Berberine from Ethanol Seed Extract of Coscinium Fenestratum (Gaertn.) Colebr., J. King Saud Univ. Sci., 35(5), 102666. https://doi.org/10.1016/j.jksus.2023.102666.
- Gomes, A. F. T.; De Medeiros, W. F.; De Oliveira, G. S.; Medeiros, I.; Maia, J. K. D. S.; Bezerra, I. W. L.; Piuvezam, G.; Morais, A. H. D. A. (2022)., In Silico Structure-Based Designers of Therapeutic Targets for Diabetes Mellitus or Obesity: A Protocol for Systematic Review., PLOS ONE, 17(12), e0279039. https://doi.org/10.1371/journal.pone. 0279039.
- Reetu, R.; Garg, A.; Roy, K. K.; Roy, A.; Gupta, S. and Malakar, C. C. (2022)., In-Silico Studies for Targeting PPARγ for the Type II Diabetes Mellitus., Mater. Today Proc., 57, 44–48. https://doi.org/10.1016/j.matpr.2022. 01.299.
- Bharathi, A.; Roopan, S. M.; Vasavi, C. S.; Munusami, P.; Gayathri, G. A.; Gayathri, M. (2014)., In Silico Molecular Docking and In Vitro Antidiabetic Studies of Dihydropyrimido[4,5-a]Acridin-2-Amines., BioMed Res. Int., 1–10. https://doi.org/10.1155/2014/971569.
- Aggarwal, R. and Sumran, G. (2020)., An Insight on Medicinal Attributes of 1,2,4-Triazoles., Eur. J. Med. Chem., 205, 112652. https://doi.org/10.1016/j.ejmech. 2020.112652.
- Tannous, S.; Stellbrinck, T.; Hoter, A. and Naim, H. Y. (2023)., Interaction between the α-Glucosidases, Sucrase-Isomaltase and Maltase-Glucoamylase, in Human Intestinal Brush Border Membranes and Its Potential Impact on Disaccharide Digestion., Front. Mol. Biosci., 10, 1160860. https://doi.org/10.3389/fmolb.2023.1160860.
- Yeye, E. O.; Kanwal; Mohammed Khan, Khalid.; Chigurupati, S.; Wadood, A.; Ur Rehman, A.; Perveen, S.; Kannan Maharajan, M.; Shamim, S.; Hameed, S.; Aboaba, S. A.; Taha, M. (2020)., Syntheses, in Vitro α-Amylase and α-Glucosidase Dual Inhibitory Activities of 4-Amino-1,2,4-Triazole Derivatives Their Molecular Docking and Kinetic Studies., Bioorg. Med. Chem., 28(11), 115467. https://doi.org/10.1016/j.bmc.2020.115467.
- Gupta, S.; Baweja, G. S.; Singh, S.; Irani, M.; Singh, R.; Asati, V. (2023)., Integrated Fragment-Based Drug Design and Virtual Screening Techniques for Exploring the Antidiabetic Potential of Thiazolidine-2,4-Diones: Design, Synthesis and in Vivo Studies., Eur. J. Med. Chem., 261, 115826. https://doi.org/10.1016/j.ejmech.2023.115826.
- Mrabti, N. N.; Mrabti, H. N.; Mohammed, E.R.; Dguigui, K.; Doudach, L.; Khalil, Z.; Bouyahya, A.; Zengin, G.; Elhallaoui, M. (2022)., Molecular Docking and QSAR Studies for Modeling the Inhibitory Activity of Pyrazole-Benzimidazolone Hybrids as Novel Inhibitors of Human 4-Hydroxyphenylpyruvate Dioxygenase Against Type I Tyrosinemia Disease., Biointerface Res. Appl. Chem., 13 (1), 38. https://doi.org/10.33263/BRIAC131.038.
- Verma, J.; Khedkar, V. and Coutinho, E. (2010)., 3D-QSAR in Drug Design - A Review., Curr. Top. Med. Chem., 10 (1), 95–115. https://doi.org/10.2174/15680 2610790232260.
- Moshawih, S.; Bu, Z. H.; Goh, H. P.; Kifli, N.; Lee, L. H.; Goh, K. W. and Ming, L. C. (2024)., Consensus Holistic Virtual Screening for Drug Discovery: A Novel Machine Learning Model Approach., J. Cheminformatics, 16(1), 62. https://doi.org/10.1186/s13321-024-00855-8.
- Gómez-Jeria, J. S. (2017)., 45 Years of the KPG Method: A Tribute to Federico Peradejordi., J. Comput. Methods Mol. Des., 7(1), 17–37.
- Shamim, S.; Khan, K. M.; Ullah, N.; Chigurupati, S.; Wadood, A.; Ur Rehman, A.; Ali, M.; Salar, U.; Alhowail, A.; Taha, M. and Perveen, S. (2020)., Synthesis and Screening of (E)-3-(2-Benzylidenehydrazinyl)-5,6-Diphenyl-1,2,4-Triazine Analogs as Novel Dual Inhibitors of α-Amylase and α-Glucosidase., Bioorganic Chem., 101, 103979. https://doi.org/10.1016/j.bioorg.2020.103979.
- Gómez Jeria, J. S. (2013)., A New Set of Local Reactivity Indices within the Hartree-Fock-Roothaan and Density Functional Theory Frameworks., Can. Chem. Trans., 1(1), 25–55.
- Gómez Jeria, J. S. and Flores-Catalán, M. (2013)., Quantum-Chemical Modeling of the Relationships between Molecular Structure and In Vitro Multi-Step, Multimechanistic Drug Effects. HIV-1 Replication Inhibition and Inhibition of Cell Proliferation as Examples. Can. Chem. Trans., 1(3), 215–237. https://doi.org/DOI: 10.13179/canchemtrans.2013.01.03.0040., undefined
- Gómez-Jeria, J. S.; Kpotin, G.; Kuevi, U.; Mensah, J.-B.; De Gautier, K. (2017)., A Theoretical Study of the Relationships between Electronic Structure and Inhibitory Effects of Caffeine Derivatives on Neoplastic Transformation., Int. Res. J. Pure Appl. Chem., 14, 1–10. https://doi.org/10.9734/IRJPAC/2017/32694.
- Kpotin, G. A.; Bédé, A. L.; Houngue-Kpota, A.; Anatovi, W.; Kuevi, U. A.; Atohoun, G. S.; Mensah, J.-B.; Gómez-Jeria, J. S. and Badawi, M. (2019)., Relationship between Electronic Structures and Antiplasmodial Activities of Xanthone Derivatives: A 2D-QSAR Approach., Struct. Chem., 30(6), 2301–2310. https://doi.org/10.1007/s11224-019-01333-w.
- Kpotin, G.; Atohoun, S. Y. G.; Kuevi, A. U.; Kpota-Hounguè, A.; Mensah, J.-B.; Gómez Jeria, J. S. (2016)., A Quantum-Chemical Study of the Relationships between Electronic Structure and Trypanocidal Activity against Trypanosoma Brucei Brucei of a Series of Thiosemicarbazone Derivatives., Pharm. Lett., 8(17), 215–222.
- Kpotin, A. G.; Kankinou, G.; Kuevi, U.; Gómez Jeria, J. S.; Mensah, J.B. (2017)., A Theoretical Study of the Relationships between Electronic Structure and Inhibitory Effects of Caffeine Derivatives on Neoplastic Transformation., Int. Res. J. Pure Appl. Chem., 14(1), 1–10. https://doi.org/10.9734/IRJPAC/2017/32694.
- Kankinou, S. G.; Yildiz, M.; Kocak, A. (2023)., Exploring Potential Plasmodium Kinase Inhibitors: A Combined Docking, MD and QSAR Studies., J. Biomol. Struct. Dyn., 1–11. https://doi.org/10.1080/07391102.2023.2249111.
- D-Cent-QSAR: (2014)., A Program to Generate Local Atomic Reactivity Indices from Gaussian 03 Log Files., 1.0,2014.
- Müller, J.; Klein, R.; Tarkhanova, O.; Gryniukova, A.; Borysko, P.; Merkl, S.; Ruf, M.; Neumann, A.; Gastreich, M.; Moroz, Y. S.; Klebe, G. and Glinca, S. (2022)., Magnet for the Needle in Haystack: “Crystal Structure First” Fragment Hits Unlock Active Chemical Matter Using Targeted Exploration of Vast Chemical Spaces., J. Med. Chem., 65 (23), 15663–15678. https://doi.org/10.1021/ acs.jmedchem.2c00813.
- Beroza, P.; Crawford, J. J.; Ganichkin, O.; Gendelev, L.; Harris, S. F.; Klein, R.; Miu, A.; Steinbacher, S.; Klingler, F.-M.; Lemmen, C. (2022)., Chemical Space Docking Enables Large-Scale Structure-Based Virtual Screening to Discover ROCK1 Kinase Inhibitors., Nat. Commun., 13 (1), 6447. https://doi.org/10.1038/s41467-022-33981-8.
- Tan, L.; Wu, C.; Zhang, J.; Yu, Q.; Wang, X.; Zhang, L.; Ge, M.; Wang, Z.; Ouyang, L.; Wang, Y. (2023)., Design, Synthesis, and Biological Evaluation of Heterocyclic-Fused Pyrimidine Chemotypes Guided by X-Ray Crystal Structure with Potential Antitumor and Anti-Multidrug Resistance Efficacy Targeting the Colchicine Binding Site., J. Med. Chem., 66(5), 3588–3620. https://doi.org/10.1021/acs.jmedchem.2c02115.
- Salari-jazi, A.; Mahnam, K.; Sadeghi, P.; Damavandi, M. S. and Faghri, J. (2021)., Discovery of Potential Inhibitors against New Delhi Metallo-β-Lactamase-1 from Natural Compounds: In Silico-Based Methods., Sci. Rep., 11(1), 2390. https://doi.org/10.1038/s41598-021-82009-6.
- infiniSee Version (2024)., Biosolveit., www.biosolveit.de/infiniSee (accessed 2025-02-23).
- Schmidt, R.; Klein, R.; Rarey, M. (2022)., Maximum Common Substructure Searching in Combinatorial Make-on-Demand Compound Spaces., J. Chem. Inf. Model., 62 (9), 2133–2150. https://doi.org/10.1021/acs.jcim.1c00640.
- Namasivayam, V.; Silbermann, K.; Pahnke, J.; Wiese, M. and Stefan, S. M. (2021)., Scaffold Fragmentation and Substructure Hopping Reveal Potential, Robustness, and Limits of Computer-Aided Pattern Analysis (C, undefined
- PA)., Comput. Struct. Biotechnol. J., 19, 3269–3283. https://doi.org/10.1016/j.csbj.2021.05.018., undefined
- Fligner, M. A.; Verducci, J. S. and Blower, P. E. (2002)., A Modification of the Jaccard–Tanimoto Similarity Index for Diverse Selection of Chemical Compounds Using Binary Strings., Technometrics, 44(2), 110–119. https://doi.org/10.1198/004017002317375064.
- Bajusz, D.; Rácz, A.; Héberger, K. (2015)., Why Is Tanimoto Index an Appropriate Choice for Fingerprint-Based Similarity Calculations?., J. Cheminformatics, 7(1), 20. https://doi.org/10.1186/s13321-015-0069-3.
- Tagami, T.; Yamashita, K.; Okuyama, M.; Mori, H.; Yao, M. and Kimura, A. (2013)., Molecular Basis for the Recognition of Long-Chain Substrates by Plant α-Glucosidases., J. Biol. Chem., 288(26), 19296–19303. https://doi.org/10.1074/jbc.M113.465211.
- Genetic Optimization for Ligand Docking (GOLD) (2022)., Solutions Software Gold., https://www.ccdc.cam.ac.uk/ Solutionssoftware/gold/?utm_source=chatgpt.com (accessed 2022-09-09).
- Verdonk, M. L.; Cole, J. C.; Hartshorn, M. J.; Murray, C. W.; Taylor, R. D. (2003)., Improved Protein–Ligand Docking Using GOLD., Proteins Struct. Funct. Bioinforma., 52 (4), 609–623. https://doi.org/10.1002/ prot.10465.
- Graham, L. P. (2013)., AN Introduction to Medicinal Chemistry., 5th ed.; Oxford, University Press: Great Clarendon Street, Oxford, OX2 6DP, United Kingdom.
